Kaminski J*, Gibson MK*, Franzosa EA, Segata N, Dantas G, Huttenhower C. Fast and accurate metagenomic search with ShortBRED. (In Preparation)
Lax S, Smith DP, Hampton-Marcell J, Owens SM, Handley KM, Scott NM, Gibbson SM, Larsen P, Shogan BD, Weiss S, Metcalf JL, Ursell LK, Vazquez-Baeza Y, Van Treuren W, Hasan NA, Gibson MK, Colwell R, Dantas G, Knight R, Gilbert JA. Longitudinal Analysis of Microbial Interaction Between Humans and the Indoor Environment. Science. 2014; 345(6200):1048 [PDF] | [supplementary materials]
Gibson MK, Forsberg KJ, Dantas G. Improved annotation of antibiotic resistance determinants reveals resistomes cluster by ecology. The ISME Journal. 2014; 10.1038/ismej.2014.106. [PDF] | [supplementary materials]
Gibson MK*, Pesesky MW*, Dantas G. The Yin and Yang of Bacterial Resilience in the Human Gut Microbiota. J. Mol. Biol. 2014; DOI: 10.1016/j.jmb.2014.05.029 [PDF]
Forsberg KJ*, Patel S*, Gibson MK, Lauber CL, Knight R, Fierer N, Dantas G. Bacterial phylogeny structures soil resistomes across habitats. Nature. 2014; 509 (7502): 612. [PDF] | [supplementary materials]
Pehrsson EC, Forsberg KJ, Gibson MK, Ahmadi S and Dantas G. Novel resistance functions uncovered using functional metagenomic investigations of resistance reservoirs. Front Microbiol. 2013; 4:145. doi: 10.3389/fmicb.2013.00145 [PDF]